Carlos Eduardo G. Amorim
cg2827 at columbia.edu
Eduardo holds a B.Sc. in Biological Sciences and a M.Sc. in Animal Biology from the University of Brasília (Brazil). He completed his Ph.D. in Genetics with Prof. Francisco Salzano at the Federal University of Rio Grande do Sul (Brazil) in 2013 working on the influence of demographic, cultural, and adaptive processes on the genetic diversity of Amerindians during the settlement of the New World. In the lab, he was supported by a Science Without Borders fellowship from Brazil and studied the population genetics of Mendelian disease alleles. As of Dec. 2016, he is a postdoc with Krishna Veeramah at Stony Brook.
Celine‘s research interests focused on developing and investigating computational methods to understand speciation, particularly in great apes. She is currently employed as a Bioinformatician at Qiagen.
Kevin was a double major in Computational Biology and Computer Science at the University of Pennsylvania (2004). He then spent a year studying and traveling in China and Taiwan. He was the recipient of an NSF pre-doctoral fellowship, and of the Biological Sciences Division Harper Dissertation Fellowship. His primary research focus was on the evolution of regulatory regions, but he also worked on a variety of other questions about the effects of natural selection and recombination. See his rescape page for information on his regulatory evolution simulation software (Genetics 2011 paper).
He is the founder of Wordswing and lives in Philadelphia.
Adi holds a B.A. in Computer Science from Bar-Ilan University in Tel Aviv, Israel (2001) and a Masters in Operations Research from Cornell University (2003). She worked as a programmer for Carlos D. Bustamante at Cornell for two years before joining the lab. Her research concentrated on the causes and consequences of variation in human recombination. Adi received her PhD in winter 2011 and remained in the lab as a postdoc until Sept 2011. She now works as a data scientist in Israel.
Ziyue received a B.A. in Biology from Tsinghua University in Beijing, China (2010). She was a graduate student in the Genetics, Genomics and Systems Biology program at the University of Chicago and the recipient of the Biological Sciences Division Harper Dissertation Fellowship. She worked on modeling and identifying long-lived balanced polymorphisms, as well as on modeling and estimating neutral and deleterious mutation rates in humans. She is now a CEHG postdoc in Jonathan Pritchard’s lab at Stanford.
Former research specialist, working jointly with Marcelo Nobrega.
Patricia received her Bachelor and Master degrees in Biology at Complutense University in Madrid. She obtained her Ph.D. in Biology at the same university in 2008, focusing on the cytological and molecular characterization of two novel heterochromatic proteins in the diptera Sciara coprophila. During her postdoctoral training at the University of Chicago, she studied the biological role of laminins, major component of basement membranes, in epithelial morphogenesis and cell migration. She worked on joint projects with Marcelo Nobrega’s lab for a year, and is now working full-time in the Nobrega lab at the University of Chicago.
Ryan obtained a B.A. with honors in mathematics from Pitzer College (Claremont, CA) in 2003, and completed his Ph.D. with Carlos Bustamante at Cornell University in January 2008. His research has focused on developing population genetic models of demography and selection to better understand modern day patterns of genetic variation. Ryan is currently an Associate Professor in the Department of Bioengineering and Therapeutic Sciences at the University of California, San Francisco.
Joanna completed a dual degree in mathematics and biology at Brown University (2003) and obtained her Ph.D. in Genome Sciences with Willie Swanson at University of Washington (2008). Her research interests are focused around understanding the genetic basis of adaptation, in particular to extreme environments. While in the lab, Joanna was supported by an NRSA fellowship. She was then a postdoctoral researcher in the lab of Carlos Bustamante at Stanford, and is now an Assistant Professor at Washington State University.
Amir holds a B.Sc. in Applied Physics (Sharif University of Technology, Tehran, Iran), M.A.Sc. in Electrical Engineering (University of Ottawa, Ottawa, Canada) and a PhD in Mathematics (2010) (Concordia University, Montreal, Canada). While in the group, Amir’s research focused on developing a method to infer recombination patterns underlying non-disjunction in humans. He was employed at Ancestry.com, and is now a data scientist at Shopify.
Ellen has a B.A. in Biology from Amherst College (2006), an M.Phil. in Biological Anthropology from the University of Cambridge (2007), where she was a Churchill scholar, and a Certificate in Chinese Language from Lanzhou University (2008). For her PhD, she worked on a range of topics, from the genetic basis of variation in human recombination to the determinants of diversity level differences among species. She stayed in the lab for six months through March 2014, analyzing patterns of genetic variation in finches, and is now a postdoc with Chris Spencer at the University of Oxford.
Daniel obtained a dual degree in biology and microbiology at Universidad de Los Andes in Columbia (2005). He completed his Ph.D. in Ecology and Evolution with Jerry Coyne at the University of Chicago in Spring 2010, focused on the genetic architecture of reproductive isolation in different species of Drosophila. He was then a University of Chicago fellow in the group, working primarily on the evolution of reproductive isolation via reinforcement. In 2014, he was awarded the Society for the Study of Evolution’s Dobzhansky prize. He is now a faculty member at UNC.
Cord Melton worked as a computer programmer in the group for close to two years. She has a B.S. in Computer Science from the University of Chicago.
Wynn received a B.S. in Biology, Ecology and Evolutionary Biology track, from Yale University (2004). She worked as an AmeriCorps VISTA and then as a technologist for the American Red Cross Molecular Lab in Philadelphia before coming to the University of Chicago. For her doctoral work, she examined evidence for transmission distortion in the human genome, and worked with genome-wide sequencing data from two related lemur species in order to learn about how population sizes have changed over time, as well as to find genetic changes that may account for inter-species pigmentation differences. She is currently a postdoc with Doris Bachtrog at Berkeley.
Susan was a postdoc in the lab at the Max Planck Institute for Evolutionary Anthropology in Leipzig, after receiving a Ph.D. with Marc Feldman at Stanford. She worked on demographic inference in humans, and on the evolution of recombination in apes.
Keerthi received her Bachelors degree in Biotechnology from Jawaharlal Nehru Technological University, Hyderabad, India (2009) and her Masters in Bioinformatics from University of Michigan at Ann Arbor (2011). After graduating, she worked as a Research Associate for the Bioinformatics Core at the University of Michigan, Ann Arbor where she focused on the analysis and interpretation of next generation sequencing data. She worked in the group for close to two years, on the analysis of genome resequencing data from flies and birds, and is now a programmer at Imperial College in the UK.
Laure received a Masters in Evolutionary Biology at the University of Paris 7 – Denis Diderot (2006) and a PhD in Population Genetics with Evelyne Heyer and Renaud Vitalis at the National Museum of Natural History of Paris (2010). Her doctoral research focused on understanding the influence of lifestyle on demographic history, as well as on local adaptation of Central Asian human populations. For her postdoc, Laure worked on the molecular evolution of PRDM9, as well as on balancing selection in primates, notably at ABO. She is now a CNRS researcher at the Musée de l’Homme in Paris.
Sonal graduated with her B.A. in Biology from Washington University in St. Louis and with her Ph.D. (2013) from University of California, Berkeley, advised by Craig Moritz. In her dissertation, Sonal studied speciation and hybridization in five co-occurring hybrid zones, all of which formed between Australian rainforest lizards. She spent one year in the lab, studying the evolution of recombination in wild populations of birds. She is now a postdoc with Dan Rabosky at the University of Michigan.
Alva received her B.A. in Molecular Biology with a Certificate in Biophysics from Princeton University (2013), and an MA from the Department of Biological Sciences at Columbia University, studying patterns of mutation in human pedigrees. She is now employed at Lighthouse Datalab.
Kosuke worked on modeling classic selective sweeps and sweeps on standing variation. He is now an Assistant Professor at Kyushu University in Japan.
Aarti completed her Bachelors (Double major) in Life sciences and Biochemistry from St. Xavier’s college in Mumbai, India (2006), followed by a Masters in Biochemistry from the University of Mumbai, India (2008). She then received a Masters in Bioinformatics from the University of Illinois at Urbana-Champaign (2010), for which she worked on genome assembly and built bioinformatics pipelines for a sociogenomics project designed to understand the evolution of social behaviour in bees. She worked as a programmer in the lab for 18 months, building pipelines for evolutionary genomics analyses. She is currently a graduate student in the lab of Joe Thornton at the University of Chicago.
Amy holds dual B.S. degrees in Computer Science and Mathematics from the University of Utah (2003), and S.M. (2005) and Ph.D. (2010) degrees in Computer Science from Massachusetts Institute of Technology. From 2009-2013, she was a postdoctoral research fellow at Harvard Medical School, advised by David Reich and David Altshuler. Her research interests focus on understanding haplotypes: their structure, genealogy, and evolution, as well as on computational haplotype-based methods development. Her current research focuses on meiotic recombination, including the rate and biological processes underlying gene conversion formation. Amy is now an Assistant Professor in the Dept. of Biological Statistics and Computational Biology at Cornell.
Danny holds a B.A. in Biological Sciences and D.Phil. in Evolutionary Genetics from Oxford. His research interests centre on the application of population genetics tools to solving problems in human infectious diseases, and detecting the signature of natural selection within populations. His software omegaMap is designed to address that problem in recombining populations, and is available to download from his website. Danny leads a research lab at the University of Oxford studying the evolution and epidemiology of human pathogens.
Minyoung received a Ph.D. (2012) from the University of Toronto in Ecology & Evolutionary Biology (advised by Locke Rowe). Her dissertation examined how males and females evolve sexual dimorphism. Although males and females share many of the same genes, they may be under pressure to express them differently. It remains a puzzle how the genome adapts to this sexually dimorphic selection. For her postdoc, Min focused on determinants of variation in mutation rates among humans and across primates.
Sidi was a Biology and Statistics double major at the University of Chicago, who spent two years in the lab as an undergraduate. She is now a graduate student in Genetics at Harvard.